精东影业

Fighting Back Against Ug99 Wheat Stem Rust

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Wheat is the most commonly grown crop around the world, with more than 760 million tonnes produced each year. So, what happens when a virulent new strain of wheat stem rust threatens global crops?

Food crops are vulnerable to an array of ever-evolving pathogens. And once in a while, a new strain pops up that threatens the global food supply.

Ug99 wheat stem rust is one such strain. First identified in Uganda in 1998鈥1999, during International Maize and Wheat Improvement Center (CIMMYT) germplasm evaluations, this highly virulent strain of wheat stem rust set off alarm bells around the world. After more than 30 years of effective genetic resistance to stem rust, a new strain was discovered capable of infecting more than 80 percent of the available wheat varieties.

鈥淲hen we began to survey how far the disease had spread within Africa, we were shocked to discover that it wasn鈥檛 only present in Uganda,鈥 says Dr Sridhar Bhavani, head of rust pathology and molecular genetics at CIMMYT鈥檚 headquarters in Mexico. 鈥淚t had already spread into multiple countries within East Africa, including Kenya, Ethiopia, Tanzania, and Rwanda.鈥

Since then, Ug99 has been detected in more than 14 different countries, spreading from East Africa and through the Middle East to Iraq in 2019. Seventeen variants of Ug99 wheat stem rust have been detected so far, which adds more complexity to the existing challenge.

Fighting Back Against Ug99 - Outlook
Fighting Back Against Ug99 - Outlook

Food crops are vulnerable to an array of ever-evolving pathogens. And once in a while, a new strain pops up that threatens the global food supply.

Ug99 wheat stem rust is one such strain. First identified in Uganda in 1998鈥1999, during International Maize and Wheat Improvement Center (CIMMYT) germplasm evaluations, this highly virulent strain of wheat stem rust set off alarm bells around the world. After more than 30 years of effective genetic resistance to stem rust, a new strain was discovered capable of infecting more than 80 percent of the available wheat varieties.

鈥淲hen we began to survey how far the disease had spread within Africa, we were shocked to discover that it wasn鈥檛 only present in Uganda,鈥 says Dr Sridhar Bhavani, head of rust pathology and molecular genetics at CIMMYT鈥檚 headquarters in Mexico. 鈥淚t had already spread into multiple countries within East Africa, including Kenya, Ethiopia, Tanzania, and Rwanda.鈥

Since then, Ug99 has been detected in more than 14 different countries, spreading from East Africa and through the Middle East to Iraq in 2019. Seventeen variants of Ug99 wheat stem rust have been detected so far, which adds more complexity to the existing challenge.

鈥淭he disease produces billions of very minute spores, known as urediniospores,鈥 says Dr Bhavani. 鈥淎nd because they are so light, these spores can easily be carried by strong wind currents to susceptible geographies thousands of kilometers away.鈥

This put many of the world鈥檚 largest wheat-growing regions at risk, as the pathogen鈥檚 wind migration pathways pointed towards Asia鈥檚 most powerful wheat producers. 鈥淎t that point, we were not prepared for the consequences of the disease鈥檚 migration,鈥 says Dr Bhavani. 鈥淛ust 10 percent susceptibility of the global wheat area to wheat stem rust could have led to billions of dollars of losses鈥攏ot to mention hunger and poverty in those economies that were dependent on wheat and wheat-based farming systems where devastating epidemics could have occurred, as the majority of the varieties were susceptible.鈥

And it wasn鈥檛 just a matter of migration, it was also the degree of devastation. While leaf rust and yellow rust incur yield losses of 60鈥70 percent at most, a severe invasion of wheat stem rust can destroy an entire crop, leaving farmers with nothing at all to harvest.

What can be done?

With a villain as virulent as Ug99, there are many ways to fight back鈥攁nd for this pathogen in particular, it takes every available tool to gain the upper hand.

Fungicides are the simplest, most obvious solution鈥攁nd they are effective against rust diseases鈥攂ut they often aren鈥檛 always an option in the regions that need them most. 鈥淚n the majority of the developing countries that grow wheat, small-scale farmers cannot afford to use fungicides鈥攅specially in most parts of Africa,鈥 explains Dr Bhavani. 鈥淭hese farmers would be the biggest losers to this disease if their varieties were susceptible.鈥

Even in developed countries, farmers can鈥檛 rely solely on fungicides, as the pathogen develops a natural resistance over time.

Dr Bhavani notes that, 鈥淓urope is also battling a huge challenge with yellow rust, for example, where multiple applications of fungicides are being advocated, but it is still unable to control rust completely.鈥

According to Dr Bhavani, the long-term solution for diseases such as Ug99 wheat stem rust lies in introducing genetics less susceptible to the pathogen鈥攁nd then providing the world with new, more resilient wheat varieties that continue to grow and thrive.

The first step involves identifying genes that can provide resistance to Ug99. 鈥淲hen Ug99 was first detected, we had over 50 genes that were characterized to be resistant for stem rust鈥攂ut this unique strain was able to overcome more than 50 percent of the genes that were catalogued at the time. In addition to that, Ug99 was able to overcome multiple resistance genes, so the pathogen was mutating and evolving virulence for whatever gene we were trying to deploy.鈥

Fighting Back Against Ug99 - Outlook
Fighting Back Against Ug99 - Outlook

鈥淭he disease produces billions of very minute spores, known as urediniospores,鈥 says Dr Bhavani. 鈥淎nd because they are so light, these spores can easily be carried by strong wind currents to susceptible geographies thousands of kilometers away.鈥

This put many of the world鈥檚 largest wheat-growing regions at risk, as the pathogen鈥檚 wind migration pathways pointed towards Asia鈥檚 most powerful wheat producers. 鈥淎t that point, we were not prepared for the consequences of the disease鈥檚 migration,鈥 says Dr Bhavani. 鈥淛ust 10 percent susceptibility of the global wheat area to wheat stem rust could have led to billions of dollars of losses鈥攏ot to mention hunger and poverty in those economies that were dependent on wheat and wheat-based farming systems where devastating epidemics could have occurred, as the majority of the varieties were susceptible.鈥

And it wasn鈥檛 just a matter of migration, it was also the degree of devastation. While leaf rust and yellow rust incur yield losses of 60鈥70 percent at most, a severe invasion of wheat stem rust can destroy an entire crop, leaving farmers with nothing at all to harvest.

What can be done?

With a villain as virulent as Ug99, there are many ways to fight back鈥攁nd for this pathogen in particular, it takes every available tool to gain the upper hand.

Fungicides are the simplest, most obvious solution鈥攁nd they are effective against rust diseases鈥攂ut they often aren鈥檛 always an option in the regions that need them most. 鈥淚n the majority of the developing countries that grow wheat, small-scale farmers cannot afford to use fungicides鈥攅specially in most parts of Africa,鈥 explains Dr Bhavani. 鈥淭hese farmers would be the biggest losers to this disease if their varieties were susceptible.鈥

Even in developed countries, farmers can鈥檛 rely solely on fungicides, as the pathogen develops a natural resistance over time.

Dr Bhavani notes that, 鈥淓urope is also battling a huge challenge with yellow rust, for example, where multiple applications of fungicides are being advocated, but it is still unable to control rust completely.鈥

According to Dr Bhavani, the long-term solution for diseases such as Ug99 wheat stem rust lies in introducing genetics less susceptible to the pathogen鈥攁nd then providing the world with new, more resilient wheat varieties that continue to grow and thrive.

The first step involves identifying genes that can provide resistance to Ug99. 鈥淲hen Ug99 was first detected, we had over 50 genes that were characterized to be resistant for stem rust鈥攂ut this unique strain was able to overcome more than 50 percent of the genes that were catalogued at the time. In addition to that, Ug99 was able to overcome multiple resistance genes, so the pathogen was mutating and evolving virulence for whatever gene we were trying to deploy.鈥

The result? A series of boom-and-bust cycles, where the newly deployed wheat varieties provided several years of resistance and relief before the pathogen evolved to threaten the wheat once again.

Longer-term success lies in combining multiple resistance genes within a single wheat variety. 鈥淲hen you incorporate a combination of genes鈥攌nown as complex adult plant resistance (APR) genes鈥攊nto a variety, you can enhance its resilience,鈥 says Dr Bhavani. 鈥淓ven if one of the genes gets broken down, the other genes will still confer effective resistance.鈥

With this in mind, CIMMYT has released more than 200 new resistant wheat varieties over the past decade. By acting swiftly and deploying more-resilient varieties at the source of the disease鈥擡ast Africa鈥攖hey were able to reduce the inoculum load and prevent the spread of the devastating pathogen.

鈥淲e released quite a few varieties that carry complex APRs鈥攁nd they are still holding after 10 years,鈥 says Dr Bhavani, 鈥渟uggesting that this approach is the way forward when it comes to building complex resistance and enhancing a variety鈥檚 sustainability.鈥

What鈥檚 to come?

Right now, it seems like science has solved the problem, but this pathogen is not done with us yet. Ug99 wheat stem rust will continue to evolve, and ongoing research is required if we want to stay ahead of the game.

鈥淒eveloping and producing a new variety can take six to eight years,鈥 says Dr Bhavani. 鈥淎fter that, it can take just as long鈥攊f not longer鈥攖o deploy a released variety into farmers鈥 fields. And in that time, the pathogen is not sitting idle. It鈥檚 trying to mutate鈥攁nd we have had experiences where a variety gets defeated before it even reaches the farmers.鈥

Fighting Back Against Ug99 - Outlook
Fighting Back Against Ug99 - Outlook

The result? A series of boom-and-bust cycles, where the newly deployed wheat varieties provided several years of resistance and relief before the pathogen evolved to threaten the wheat once again.

Longer-term success lies in combining multiple resistance genes within a single wheat variety. 鈥淲hen you incorporate a combination of genes鈥攌nown as complex adult plant resistance (APR) genes鈥攊nto a variety, you can enhance its resilience,鈥 says Dr Bhavani. 鈥淓ven if one of the genes gets broken down, the other genes will still confer effective resistance.鈥

With this in mind, CIMMYT has released more than 200 new resistant wheat varieties over the past decade. By acting swiftly and deploying more-resilient varieties at the source of the disease鈥擡ast Africa鈥攖hey were able to reduce the inoculum load and prevent the spread of the devastating pathogen.

鈥淲e released quite a few varieties that carry complex APRs鈥攁nd they are still holding after 10 years,鈥 says Dr Bhavani, 鈥渟uggesting that this approach is the way forward when it comes to building complex resistance and enhancing a variety鈥檚 sustainability.鈥

What鈥檚 to come?

Right now, it seems like science has solved the problem, but this pathogen is not done with us yet. Ug99 wheat stem rust will continue to evolve, and ongoing research is required if we want to stay ahead of the game.

鈥淒eveloping and producing a new variety can take six to eight years,鈥 says Dr Bhavani. 鈥淎fter that, it can take just as long鈥攊f not longer鈥攖o deploy a released variety into farmers鈥 fields. And in that time, the pathogen is not sitting idle. It鈥檚 trying to mutate鈥攁nd we have had experiences where a variety gets defeated before it even reaches the farmers.鈥

Hope is not lost. New solutions are always on the horizon, and it鈥檚 only a matter of time before gene editing tools and technologies such as CRISPR will enhance our ability to fight back. There is also much to be done in terms of informing farmers about the importance of this disease. Teaching them how to scout for it early on, adopt resistant varieties, and ensure that they know how to protect those varieties and prevent the spread of Ug99 wheat stem rust is critical.

鈥淎ll of these solutions go hand in hand,鈥 concludes Dr. Bhavani. 鈥淪urveillance is needed to understand the pathogen virulence diversity and spread. Gene discovery is needed to enhance breeders鈥 toolboxes with diverse genes for rust resistance. And then a deployment strategy is needed to ensure that farmers have everything they need to keep the disease at bay.鈥

Fighting Back Against Ug99 - Outlook
Fighting Back Against Ug99 - Outlook

Hope is not lost. New solutions are always on the horizon, and it鈥檚 only a matter of time before gene editing tools and technologies such as CRISPR will enhance our ability to fight back. There is also much to be done in terms of informing farmers about the importance of this disease. Teaching them how to scout for it early on, adopt resistant varieties, and ensure that they know how to protect those varieties and prevent the spread of Ug99 wheat stem rust is critical.

鈥淎ll of these solutions go hand in hand,鈥 concludes Dr. Bhavani. 鈥淪urveillance is needed to understand the pathogen virulence diversity and spread. Gene discovery is needed to enhance breeders鈥 toolboxes with diverse genes for rust resistance. And then a deployment strategy is needed to ensure that farmers have everything they need to keep the disease at bay.鈥

Sources:

  • Background interview: Andr茅 Du Toit
  • Expert interview: Dr. Sridhar Bhavani
  • Fetch et al., 2021, Stem rust: Its history in Kenya and research to combat a global wheat threat, Canadian Journal of Plant Pathology